dclab
0.14.3

Contents:

  • Getting started
  • Command-line interface
  • Examples
  • Advanced Usage
  • Code reference
  • Changelog
  • Bilbliography
  • Imprint/Impressum
dclab
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Dclab is a Python library for the post-measurement analysis of real-time deformability cytometry (RT-DC) datasets. This is the documentation of dclab version 0.14.3.

Documentation¶

Contents:

  • Getting started
    • Installation
    • Use cases
    • Basic usage
  • Command-line interface
    • dclab-condense
    • dclab-join
    • dclab-tdms2rtdc
    • dclab-verify-dataset
  • Examples
    • Plotting isoelastics
  • Advanced Usage
    • Notation
      • Events
      • Features
      • Ancillary features
      • Filters
      • Experiment metadata
      • Analysis metadata
    • RT-DC datasets
      • Basic usage
      • Statistics
      • Export
    • Scatter plots
      • KDE scatter plot
      • KDE scatter plot with event-density-based downsampling
      • KDE estimate on a log-scale
      • Isoelasticity lines
      • Contour plot with percentiles
      • Polygon filters / Shape-Out
    • Fluorescence traces
  • Code reference
    • module-level methods
    • global definitions
      • configuration
      • features
      • parse functions
    • RT-DC dataset manipulation
      • Base class
      • Dictionary format
      • HDF5 (.rtdc) format
      • Hierarchy format
      • TDMS format
      • config
      • export
      • filter
    • low-level functionalities
      • downsampling
      • features
      • isoelastics
      • kde_contours
      • kde_methods
      • polygon_filter
      • statistics
  • Changelog
  • Bilbliography
  • Imprint/Impressum

Indices and tables¶

  • Index
  • Module Index
  • Search Page
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© Copyright 2015, Paul Müller Revision 76c8b024.

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