0.32.1
Contents:
Getting started
Command-line interface
Examples
Advanced Usage
Code reference
Changelog
Bilbliography
Imprint/Impressum
dclab
Docs
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Index
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Index
A
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B
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C
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D
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E
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F
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G
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H
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I
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K
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L
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M
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N
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P
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R
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S
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T
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U
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V
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W
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Y
A
add() (dclab.isoelastics.Isoelastics method)
add_api_key() (dclab.rtdc_dataset.fmt_dcor.APIHandler class method)
add_dataset() (dclab.lme4.wrapr.Rlme4 method)
add_px_err() (dclab.isoelastics.Isoelastics static method)
AncillaryFeature (class in dclab.rtdc_dataset.ancillaries.ancillary_feature)
api_keys (dclab.rtdc_dataset.fmt_dcor.APIHandler attribute)
APIHandler (class in dclab.rtdc_dataset.fmt_dcor)
apply_filter() (dclab.rtdc_dataset.RTDCBase method)
assemble_tf_dataset_scalars() (in module dclab.ml.tf_dataset)
AutoRConsole (class in dclab.lme4.rsetup)
AutoRecursiveDict (class in dclab.isoelastics)
available_features() (dclab.rtdc_dataset.ancillaries.ancillary_feature.AncillaryFeature static method)
available_methods (dclab.statistics.Statistics attribute)
avi() (dclab.rtdc_dataset.export.Export method)
B
BadFeatureSizeWarning
BadMethodWarning
BaseModel (class in dclab.ml.models)
bin_num_doane() (in module dclab.kde_methods)
bin_width_doane() (in module dclab.kde_methods)
bin_width_percentile() (in module dclab.kde_methods)
bootstrapped_median_distributions() (in module dclab.lme4.wrapr)
C
cache_queries (dclab.rtdc_dataset.fmt_dcor.APIHandler attribute)
can_open() (dclab.rtdc_dataset.RTDC_HDF5 static method)
check_data() (dclab.lme4.wrapr.Rlme4 method)
check_lut_identifier() (in module dclab.isoelastics)
check_r() (in module dclab.lme4.rsetup)
clear_all_filters() (dclab.polygon_filter.PolygonFilter static method)
close() (dclab.lme4.rsetup.AutoRConsole method)
compute() (dclab.rtdc_dataset.ancillaries.ancillary_feature.AncillaryFeature method)
config (dclab.rtdc_dataset.RTDCBase attribute)
Configuration (class in dclab.rtdc_dataset.config)
consoleread() (dclab.lme4.rsetup.AutoRConsole method)
consolewrite_print() (dclab.lme4.rsetup.AutoRConsole method)
consolewrite_warnerror() (dclab.lme4.rsetup.AutoRConsole method)
convert() (dclab.isoelastics.Isoelastics static method)
(in module dclab.features.emodulus.scale_linear)
copy() (dclab.polygon_filter.PolygonFilter method)
(dclab.rtdc_dataset.config.Configuration method)
corr_deform_with_area_um() (in module dclab.features.emodulus.pxcorr)
corr_deform_with_volume() (in module dclab.features.emodulus.pxcorr)
correct_crosstalk() (in module dclab.features.fl_crosstalk)
D
data (dclab.lme4.wrapr.Rlme4 attribute)
dclab.dfn.CFG_ANALYSIS (built-in variable)
dclab.dfn.CFG_METADATA (built-in variable)
dclab.dfn.config_funcs (built-in variable)
dclab.dfn.config_keys (built-in variable)
dclab.dfn.config_types (built-in variable)
dclab.dfn.feature_labels (built-in variable)
dclab.dfn.feature_name2label (built-in variable)
dclab.dfn.feature_names (built-in variable)
dclab.dfn.FEATURES_NON_SCALAR (built-in variable)
dclab.dfn.scalar_feature_names (built-in variable)
dclab.downsampling
module
dclab.features.emodulus
module
dclab.features.emodulus.load
module
dclab.features.emodulus.pxcorr
module
dclab.features.emodulus.scale_linear
module
dclab.features.emodulus.viscosity
module
dclab.isoelastics
module
dclab.kde_contours
module
dclab.kde_methods
module
dclab.lme4.rlibs
module
dclab.lme4.rsetup
module
dclab.lme4.wrapr
module
dclab.ml.mllibs
module
dclab.ml.modc
module
dclab.ml.models
module
dclab.ml.tf_dataset
module
dclab.parse_funcs
module
dclab.polygon_filter
module
dclab.rtdc_dataset.ancillaries.ancillary_feature
module
dclab.statistics
module
downsample_rand() (in module dclab.downsampling)
E
Export (class in dclab.rtdc_dataset.export)
export (dclab.rtdc_dataset.RTDCBase attribute)
export_model() (in module dclab.ml.modc)
EXTERNAL_LUTS (in module dclab.features.emodulus.load)
extrapolate_emodulus() (in module dclab.features.emodulus)
F
fbool() (in module dclab.parse_funcs)
fcs() (dclab.rtdc_dataset.export.Export method)
feature (dclab.lme4.wrapr.Rlme4 attribute)
feature_exists() (in module dclab.dfn)
feature_names (dclab.rtdc_dataset.ancillaries.ancillary_feature.AncillaryFeature attribute)
features (dclab.rtdc_dataset.ancillaries.ancillary_feature.AncillaryFeature attribute)
features() (dclab.rtdc_dataset.RTDCBase property)
features_innate() (dclab.rtdc_dataset.RTDCBase property)
features_loaded() (dclab.rtdc_dataset.RTDCBase property)
features_scalar() (dclab.rtdc_dataset.RTDCBase property)
Filter (class in dclab.rtdc_dataset.filter)
filter (dclab.rtdc_dataset.RTDCBase attribute)
filter() (dclab.polygon_filter.PolygonFilter method)
FilterIdExistsWarning
find_contours_level() (in module dclab.kde_contours)
fint() (in module dclab.parse_funcs)
fintlist() (in module dclab.parse_funcs)
fit() (dclab.lme4.wrapr.Rlme4 method)
flow_rate() (in module dclab.statistics)
format (dclab.rtdc_dataset.RTDCBase attribute)
func_types (in module dclab.parse_funcs)
G
get() (dclab.isoelastics.Isoelastics method)
(dclab.rtdc_dataset.config.Configuration method)
get_available_identifiers() (in module dclab.isoelastics)
get_bad_vals() (in module dclab.kde_methods)
get_bright() (in module dclab.features.bright)
get_compensation_matrix() (in module dclab.features.fl_crosstalk)
get_contour() (in module dclab.features.contour)
get_dataset_event_feature() (in module dclab.ml.tf_dataset)
get_dataset_features() (dclab.ml.models.BaseModel method)
get_default() (in module dclab.isoelastics)
get_differential_dataset() (dclab.lme4.wrapr.Rlme4 method)
get_downsampled_scatter() (dclab.rtdc_dataset.RTDCBase method)
get_emodulus() (in module dclab.features.emodulus)
get_feature() (dclab.statistics.Statistics method)
get_feature_data() (dclab.lme4.wrapr.Rlme4 method)
get_feature_label() (in module dclab.dfn)
get_full_url() (dclab.rtdc_dataset.RTDC_DCOR static method)
get_inert_ratio_cvx() (in module dclab.features.inert_ratio)
get_inert_ratio_raw() (in module dclab.features.inert_ratio)
get_instance_from_id() (dclab.polygon_filter.PolygonFilter static method)
get_instances() (dclab.rtdc_dataset.ancillaries.ancillary_feature.AncillaryFeature static method)
get_kde_contour() (dclab.rtdc_dataset.RTDCBase method)
get_kde_scatter() (dclab.rtdc_dataset.RTDCBase method)
get_kde_spacing() (dclab.rtdc_dataset.RTDCBase static method)
get_lut_path() (in module dclab.features.emodulus.load)
get_pixelation_delta() (in module dclab.features.emodulus.pxcorr)
get_pixelation_delta_pair() (in module dclab.features.emodulus.pxcorr)
get_polygon_filter_names() (in module dclab.polygon_filter)
get_prints() (dclab.lme4.rsetup.AutoRConsole method)
get_project_name_from_path() (in module dclab.rtdc_dataset.fmt_tdms)
get_quantile_levels() (in module dclab.kde_contours)
get_r_path() (in module dclab.lme4.rsetup)
get_r_version() (in module dclab.lme4.rsetup)
get_statistics() (in module dclab.statistics)
get_tdms_files() (in module dclab.rtdc_dataset.fmt_tdms)
get_viscosity() (in module dclab.features.emodulus.viscosity)
get_volume() (in module dclab.features.volume)
get_warnerrors() (dclab.lme4.rsetup.AutoRConsole method)
get_with_rtdcbase() (dclab.isoelastics.Isoelastics method)
H
has_lme4() (in module dclab.lme4.rsetup)
has_r() (in module dclab.lme4.rsetup)
has_sigmoid_activation() (dclab.ml.models.TensorflowModel method)
has_softmax_layer() (dclab.ml.models.TensorflowModel method)
hash() (dclab.polygon_filter.PolygonFilter property)
(dclab.rtdc_dataset.ancillaries.ancillary_feature.AncillaryFeature method)
(dclab.rtdc_dataset.RTDC_DCOR property)
(dclab.rtdc_dataset.RTDC_HDF5 property)
(dclab.rtdc_dataset.RTDCBase property)
hash_path() (in module dclab.ml.modc)
hdf5() (dclab.rtdc_dataset.export.Export method)
hparent (dclab.rtdc_dataset.RTDC_Hierarchy attribute)
I
identifier() (dclab.rtdc_dataset.RTDCBase property)
ignore_nan_inf() (in module dclab.kde_methods)
import_all() (dclab.polygon_filter.PolygonFilter static method)
import_lme4() (in module dclab.lme4.rsetup)
import_r_submodules() (in module dclab.lme4.rlibs)
INACCURATE_SPLINE_EXTRAPOLATION (in module dclab.features.emodulus)
instace_exists() (dclab.polygon_filter.PolygonFilter static method)
install_lme4() (in module dclab.lme4.rsetup)
instances (dclab.polygon_filter.PolygonFilter attribute)
INTERNAL_LUTS (in module dclab.features.emodulus.load)
is_available() (dclab.rtdc_dataset.ancillaries.ancillary_feature.AncillaryFeature method)
is_differential() (dclab.lme4.wrapr.Rlme4 method)
Isoelastics (class in dclab.isoelastics)
IsoelasticsEmodulusMeaninglessWarning
K
kde_gauss() (in module dclab.kde_methods)
kde_histogram() (in module dclab.kde_methods)
kde_multivariate() (in module dclab.kde_methods)
kde_none() (in module dclab.kde_methods)
keys() (dclab.rtdc_dataset.config.Configuration method)
KNOWN_MEDIA (in module dclab.features.emodulus.viscosity)
KnowWhatYouAreDoingWarning
L
lcstr() (in module dclab.parse_funcs)
LimitingExportSizeWarning
Lme4InstallWarning
load_bare_model() (dclab.ml.models.BaseModel static method)
(dclab.ml.models.TensorflowModel static method)
load_data() (dclab.isoelastics.Isoelastics method)
load_from_file() (in module dclab.rtdc_dataset.config)
load_lut() (in module dclab.features.emodulus.load)
load_modc() (in module dclab.ml.modc)
load_mtext() (in module dclab.features.emodulus.load)
lock (dclab.lme4.rsetup.AutoRConsole attribute)
logs (dclab.rtdc_dataset.RTDCBase attribute)
M
MIN_DCLAB_EXPORT_VERSION (in module dclab.rtdc_dataset.fmt_hdf5)
MockRPackage (class in dclab.lme4.rlibs)
mode() (in module dclab.statistics)
model (dclab.lme4.wrapr.Rlme4 attribute)
ModelFormatExportFailedWarning
module
dclab.downsampling
dclab.features.emodulus
dclab.features.emodulus.load
dclab.features.emodulus.pxcorr
dclab.features.emodulus.scale_linear
dclab.features.emodulus.viscosity
dclab.isoelastics
dclab.kde_contours
dclab.kde_methods
dclab.lme4.rlibs
dclab.lme4.rsetup
dclab.lme4.wrapr
dclab.ml.mllibs
dclab.ml.modc
dclab.ml.models
dclab.ml.tf_dataset
dclab.parse_funcs
dclab.polygon_filter
dclab.rtdc_dataset.ancillaries.ancillary_feature
dclab.statistics
N
new_dataset() (in module dclab)
norm() (in module dclab.downsampling)
normalize() (in module dclab.features.emodulus)
P
parse_config() (dclab.rtdc_dataset.RTDC_HDF5 static method)
path (dclab.rtdc_dataset.RTDC_DCOR attribute)
(dclab.rtdc_dataset.RTDC_HDF5 attribute)
(dclab.rtdc_dataset.RTDC_TDMS attribute)
perform_lock (dclab.lme4.rsetup.AutoRConsole attribute)
point_in_poly() (dclab.polygon_filter.PolygonFilter static method)
points() (dclab.polygon_filter.PolygonFilter property)
polygon_filter_add() (dclab.rtdc_dataset.RTDCBase method)
polygon_filter_rm() (dclab.rtdc_dataset.RTDCBase method)
PolygonFilter (class in dclab.polygon_filter)
PolygonFilterError
predict() (dclab.ml.models.BaseModel method)
(dclab.ml.models.TensorflowModel method)
R
r_func_model (dclab.lme4.wrapr.Rlme4 attribute)
r_func_nullmodel (dclab.lme4.wrapr.Rlme4 attribute)
register() (dclab.ml.models.BaseModel method)
register_lut() (in module dclab.features.emodulus.load)
remove() (dclab.polygon_filter.PolygonFilter static method)
reset() (dclab.rtdc_dataset.filter.Filter method)
reset_filter() (dclab.rtdc_dataset.RTDCBase method)
Rlme4 (class in dclab.lme4.wrapr)
RNotFoundError
RTDC_DCOR (class in dclab.rtdc_dataset)
RTDC_Dict (class in dclab.rtdc_dataset)
RTDC_HDF5 (class in dclab.rtdc_dataset)
RTDC_Hierarchy (class in dclab.rtdc_dataset)
RTDC_TDMS (class in dclab.rtdc_dataset)
RTDCBase (class in dclab.rtdc_dataset)
S
save() (dclab.polygon_filter.PolygonFilter method)
(dclab.rtdc_dataset.config.Configuration method)
save_all() (dclab.polygon_filter.PolygonFilter static method)
save_bare_model() (dclab.ml.models.BaseModel static method)
(dclab.ml.models.TensorflowModel static method)
save_modc() (in module dclab.ml.modc)
scalar_feature_exists() (in module dclab.dfn)
scale_area_um() (in module dclab.features.emodulus.scale_linear)
scale_emodulus() (in module dclab.features.emodulus.scale_linear)
scale_feature() (in module dclab.features.emodulus.scale_linear)
scale_volume() (in module dclab.features.emodulus.scale_linear)
set_options() (dclab.lme4.wrapr.Rlme4 method)
set_r_path() (in module dclab.lme4.rsetup)
shuffle_array() (in module dclab.ml.tf_dataset)
Statistics (class in dclab.statistics)
SUPPORTED_FORMATS (in module dclab.ml.modc)
supported_formats() (dclab.ml.models.BaseModel static method)
(dclab.ml.models.TensorflowModel static method)
T
TemperatureOutOfRangeWarning
TensorflowModel (class in dclab.ml.models)
title (dclab.rtdc_dataset.RTDCBase attribute)
tostring() (dclab.rtdc_dataset.config.Configuration method)
tsv() (dclab.rtdc_dataset.export.Export method)
U
unique_id_exists() (dclab.polygon_filter.PolygonFilter static method)
unregister() (dclab.ml.models.BaseModel method)
update() (dclab.rtdc_dataset.config.Configuration method)
(dclab.rtdc_dataset.filter.Filter method)
V
valid() (in module dclab.downsampling)
VersionError
W
write_to_stream() (dclab.lme4.rsetup.AutoRConsole method)
Y
YoungsModulusLookupTableExceededWarning
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