Index

A

add() (dclab.isoelastics.Isoelastics method) add_api_key() (dclab.rtdc_dataset.fmt_dcor.APIHandler class method) add_dataset() (dclab.lme4.wrapr.Rlme4 method) add_px_err() (dclab.isoelastics.Isoelastics static method) AncillaryFeature (class in dclab.rtdc_dataset.ancillaries.ancillary_feature) api_keys (dclab.rtdc_dataset.fmt_dcor.APIHandler attribute) APIHandler (class in dclab.rtdc_dataset.fmt_dcor)

apply_filter() (dclab.rtdc_dataset.RTDCBase method) assemble_tf_dataset_scalars() (in module dclab.ml.tf_dataset) AutoRConsole (class in dclab.lme4.rsetup) AutoRecursiveDict (class in dclab.isoelastics) available_features() (dclab.rtdc_dataset.ancillaries.ancillary_feature.AncillaryFeature static method) available_methods (dclab.statistics.Statistics attribute) avi() (dclab.rtdc_dataset.export.Export method)

B

BadFeatureSizeWarning BadMethodWarning BaseModel (class in dclab.ml.models)

bin_num_doane() (in module dclab.kde_methods) bin_width_doane() (in module dclab.kde_methods) bin_width_percentile() (in module dclab.kde_methods) bootstrapped_median_distributions() (in module dclab.lme4.wrapr)

C

cache_queries (dclab.rtdc_dataset.fmt_dcor.APIHandler attribute) can_open() (dclab.rtdc_dataset.RTDC_HDF5 static method) CFG_ANALYSIS (in module dclab.definitions) CFG_METADATA (in module dclab.definitions) check_data() (dclab.lme4.wrapr.Rlme4 method) check_data_size() (dclab.rtdc_dataset.ancillaries.ancillary_feature.AncillaryFeature static method) check_lut_identifier() (in module dclab.isoelastics) check_r() (in module dclab.lme4.rsetup) clear_all_filters() (dclab.polygon_filter.PolygonFilter static method) close() (dclab.lme4.rsetup.AutoRConsole method) compute() (dclab.rtdc_dataset.ancillaries.ancillary_feature.AncillaryFeature method) config (dclab.rtdc_dataset.RTDCBase attribute) config_funcs (in module dclab.definitions)

config_keys (in module dclab.definitions) config_types (in module dclab.definitions) Configuration (class in dclab.rtdc_dataset.config) consoleread() (dclab.lme4.rsetup.AutoRConsole method) consolewrite_print() (dclab.lme4.rsetup.AutoRConsole method) consolewrite_warnerror() (dclab.lme4.rsetup.AutoRConsole method) convert() (dclab.isoelastics.Isoelastics static method) (in module dclab.features.emodulus.scale_linear) copy() (dclab.polygon_filter.PolygonFilter method) (dclab.rtdc_dataset.config.Configuration method) corr_deform_with_area_um() (in module dclab.features.emodulus.pxcorr) corr_deform_with_volume() (in module dclab.features.emodulus.pxcorr) correct_crosstalk() (in module dclab.features.fl_crosstalk)

D

data (dclab.lme4.wrapr.Rlme4 attribute) dclab.downsampling module dclab.features.emodulus module dclab.features.emodulus.load module dclab.features.emodulus.pxcorr module dclab.features.emodulus.scale_linear module dclab.features.emodulus.viscosity module dclab.isoelastics module dclab.kde_contours module dclab.kde_methods module dclab.lme4.rlibs module dclab.lme4.rsetup module dclab.lme4.wrapr module

dclab.ml.mllibs module dclab.ml.modc module dclab.ml.models module dclab.ml.tf_dataset module dclab.parse_funcs module dclab.polygon_filter module dclab.rtdc_dataset.ancillaries.ancillary_feature module dclab.rtdc_dataset.feat_temp module dclab.rtdc_dataset.plugins.plugin_feature module dclab.statistics module deregister_all() (in module dclab.rtdc_dataset.feat_temp) deregister_temporary_feature() (in module dclab.rtdc_dataset.feat_temp) downsample_rand() (in module dclab.downsampling)

E

Export (class in dclab.rtdc_dataset.export) export (dclab.rtdc_dataset.RTDCBase attribute)

export_model() (in module dclab.ml.modc) EXTERNAL_LUTS (in module dclab.features.emodulus.load) extrapolate_emodulus() (in module dclab.features.emodulus)

F

f2dfloatarray() (in module dclab.parse_funcs) fbool() (in module dclab.parse_funcs) fcs() (dclab.rtdc_dataset.export.Export method) feature (dclab.lme4.wrapr.Rlme4 attribute) feature_exists() (in module dclab.definitions) feature_labels (in module dclab.definitions) feature_name (dclab.rtdc_dataset.plugins.plugin_feature.PlugInFeature attribute) feature_name2label (in module dclab.definitions) feature_names (dclab.rtdc_dataset.ancillaries.ancillary_feature.AncillaryFeature attribute) (in module dclab.definitions) features (dclab.rtdc_dataset.ancillaries.ancillary_feature.AncillaryFeature attribute) (dclab.rtdc_dataset.RTDCBase property) features_innate (dclab.rtdc_dataset.RTDCBase property)

features_loaded (dclab.rtdc_dataset.RTDCBase property) FEATURES_NON_SCALAR (in module dclab.definitions) features_scalar (dclab.rtdc_dataset.RTDCBase property) Filter (class in dclab.rtdc_dataset.filter) filter (dclab.rtdc_dataset.RTDCBase attribute) filter() (dclab.polygon_filter.PolygonFilter method) FilterIdExistsWarning find_contours_level() (in module dclab.kde_contours) fint() (in module dclab.parse_funcs) fintlist() (in module dclab.parse_funcs) fit() (dclab.lme4.wrapr.Rlme4 method) flow_rate() (in module dclab.statistics) format (dclab.rtdc_dataset.RTDCBase attribute) func_types (in module dclab.parse_funcs)

G

get() (dclab.isoelastics.Isoelastics method) (dclab.rtdc_dataset.config.Configuration method) get_available_identifiers() (in module dclab.isoelastics) get_bad_vals() (in module dclab.kde_methods) get_bright() (in module dclab.features.bright) get_compensation_matrix() (in module dclab.features.fl_crosstalk) get_contour() (in module dclab.features.contour) get_dataset_event_feature() (in module dclab.ml.tf_dataset) get_dataset_features() (dclab.ml.models.BaseModel method) get_default() (in module dclab.isoelastics) get_differential_dataset() (dclab.lme4.wrapr.Rlme4 method) get_downsampled_scatter() (dclab.rtdc_dataset.RTDCBase method) get_emodulus() (in module dclab.features.emodulus) get_feature() (dclab.statistics.Statistics method) get_feature_data() (dclab.lme4.wrapr.Rlme4 method) get_feature_label() (in module dclab.definitions) get_full_url() (dclab.rtdc_dataset.RTDC_DCOR static method) get_inert_ratio_cvx() (in module dclab.features.inert_ratio) get_inert_ratio_raw() (in module dclab.features.inert_ratio)

get_instance_from_id() (dclab.polygon_filter.PolygonFilter static method) get_instances() (dclab.rtdc_dataset.ancillaries.ancillary_feature.AncillaryFeature static method) get_kde_contour() (dclab.rtdc_dataset.RTDCBase method) get_kde_scatter() (dclab.rtdc_dataset.RTDCBase method) get_kde_spacing() (dclab.rtdc_dataset.RTDCBase static method) get_lut_path() (in module dclab.features.emodulus.load) get_pixelation_delta() (in module dclab.features.emodulus.pxcorr) get_pixelation_delta_pair() (in module dclab.features.emodulus.pxcorr) get_polygon_filter_names() (in module dclab.polygon_filter) get_prints() (dclab.lme4.rsetup.AutoRConsole method) get_project_name_from_path() (in module dclab.rtdc_dataset.fmt_tdms) get_quantile_levels() (in module dclab.kde_contours) get_r_path() (in module dclab.lme4.rsetup) get_r_version() (in module dclab.lme4.rsetup) get_statistics() (in module dclab.statistics) get_tdms_files() (in module dclab.rtdc_dataset.fmt_tdms) get_viscosity() (in module dclab.features.emodulus.viscosity) get_volume() (in module dclab.features.volume) get_warnerrors() (dclab.lme4.rsetup.AutoRConsole method) get_with_rtdcbase() (dclab.isoelastics.Isoelastics method)

H

has_lme4() (in module dclab.lme4.rsetup) has_r() (in module dclab.lme4.rsetup) has_sigmoid_activation() (dclab.ml.models.TensorflowModel method) has_softmax_layer() (dclab.ml.models.TensorflowModel method) hash (dclab.polygon_filter.PolygonFilter property) (dclab.rtdc_dataset.RTDC_DCOR property) (dclab.rtdc_dataset.RTDC_HDF5 property) (dclab.rtdc_dataset.RTDCBase property)

hash() (dclab.rtdc_dataset.ancillaries.ancillary_feature.AncillaryFeature method) hash_path() (in module dclab.ml.modc) hdf5() (dclab.rtdc_dataset.export.Export method) hparent (dclab.rtdc_dataset.RTDC_Hierarchy attribute)

I

identifier (dclab.rtdc_dataset.RTDCBase property) ignore_nan_inf() (in module dclab.kde_methods) import_all() (dclab.polygon_filter.PolygonFilter static method) import_lme4() (in module dclab.lme4.rsetup) import_plugin_feature_script() (in module dclab.rtdc_dataset.plugins.plugin_feature) import_r_submodules() (in module dclab.lme4.rlibs) INACCURATE_SPLINE_EXTRAPOLATION (in module dclab.features.emodulus)

instace_exists() (dclab.polygon_filter.PolygonFilter static method) install_lme4() (in module dclab.lme4.rsetup) instances (dclab.polygon_filter.PolygonFilter attribute) INTERNAL_LUTS (in module dclab.features.emodulus.load) is_available() (dclab.rtdc_dataset.ancillaries.ancillary_feature.AncillaryFeature method) is_differential() (dclab.lme4.wrapr.Rlme4 method) Isoelastics (class in dclab.isoelastics) IsoelasticsEmodulusMeaninglessWarning

K

kde_gauss() (in module dclab.kde_methods) kde_histogram() (in module dclab.kde_methods) kde_multivariate() (in module dclab.kde_methods)

kde_none() (in module dclab.kde_methods) keys() (dclab.rtdc_dataset.config.Configuration method) KNOWN_MEDIA (in module dclab.features.emodulus.viscosity) KnowWhatYouAreDoingWarning

L

lcstr() (in module dclab.parse_funcs) LimitingExportSizeWarning Lme4InstallWarning load_bare_model() (dclab.ml.models.BaseModel static method) (dclab.ml.models.TensorflowModel static method) load_data() (dclab.isoelastics.Isoelastics method)

load_from_file() (in module dclab.rtdc_dataset.config) load_lut() (in module dclab.features.emodulus.load) load_modc() (in module dclab.ml.modc) load_mtext() (in module dclab.features.emodulus.load) load_plugin_feature() (in module dclab.rtdc_dataset.plugins.plugin_feature) lock (dclab.lme4.rsetup.AutoRConsole attribute) logs (dclab.rtdc_dataset.RTDCBase attribute)

M

MIN_DCLAB_EXPORT_VERSION (in module dclab.rtdc_dataset.fmt_hdf5) MockRPackage (class in dclab.lme4.rlibs) mode() (in module dclab.statistics) model (dclab.lme4.wrapr.Rlme4 attribute) ModelFormatExportFailedWarning module dclab.downsampling dclab.features.emodulus dclab.features.emodulus.load dclab.features.emodulus.pxcorr dclab.features.emodulus.scale_linear dclab.features.emodulus.viscosity dclab.isoelastics dclab.kde_contours dclab.kde_methods dclab.lme4.rlibs dclab.lme4.rsetup dclab.lme4.wrapr dclab.ml.mllibs dclab.ml.modc dclab.ml.models dclab.ml.tf_dataset dclab.parse_funcs dclab.polygon_filter dclab.rtdc_dataset.ancillaries.ancillary_feature dclab.rtdc_dataset.feat_temp dclab.rtdc_dataset.plugins.plugin_feature dclab.statistics

N

new_dataset() (in module dclab)

norm() (in module dclab.downsampling) normalize() (in module dclab.features.emodulus)

P

parse_config() (dclab.rtdc_dataset.RTDC_HDF5 static method) path (dclab.rtdc_dataset.RTDC_DCOR attribute) (dclab.rtdc_dataset.RTDC_HDF5 attribute) (dclab.rtdc_dataset.RTDC_TDMS attribute) (dclab.rtdc_dataset.RTDCBase attribute) perform_lock (dclab.lme4.rsetup.AutoRConsole attribute) plugin_feature_info (dclab.rtdc_dataset.plugins.plugin_feature.PlugInFeature attribute) plugin_path (dclab.rtdc_dataset.plugins.plugin_feature.PlugInFeature attribute) PlugInFeature (class in dclab.rtdc_dataset.plugins.plugin_feature)

PluginImportError point_in_poly() (dclab.polygon_filter.PolygonFilter static method) points (dclab.polygon_filter.PolygonFilter property) polygon_filter_add() (dclab.rtdc_dataset.RTDCBase method) polygon_filter_rm() (dclab.rtdc_dataset.RTDCBase method) PolygonFilter (class in dclab.polygon_filter) PolygonFilterError predict() (dclab.ml.models.BaseModel method) (dclab.ml.models.TensorflowModel method)

R

r_func_model (dclab.lme4.wrapr.Rlme4 attribute) r_func_nullmodel (dclab.lme4.wrapr.Rlme4 attribute) register() (dclab.ml.models.BaseModel method) register_lut() (in module dclab.features.emodulus.load) register_temporary_feature() (in module dclab.rtdc_dataset.feat_temp) remove() (dclab.polygon_filter.PolygonFilter static method) remove_all_plugin_features() (in module dclab.rtdc_dataset.plugins.plugin_feature) remove_plugin_feature() (in module dclab.rtdc_dataset.plugins.plugin_feature) reset() (dclab.rtdc_dataset.filter.Filter method)

reset_filter() (dclab.rtdc_dataset.RTDCBase method) Rlme4 (class in dclab.lme4.wrapr) RNotFoundError RTDC_DCOR (class in dclab.rtdc_dataset) RTDC_Dict (class in dclab.rtdc_dataset) RTDC_HDF5 (class in dclab.rtdc_dataset) RTDC_Hierarchy (class in dclab.rtdc_dataset) RTDC_TDMS (class in dclab.rtdc_dataset) RTDCBase (class in dclab.rtdc_dataset)

S

save() (dclab.polygon_filter.PolygonFilter method) (dclab.rtdc_dataset.config.Configuration method) save_all() (dclab.polygon_filter.PolygonFilter static method) save_bare_model() (dclab.ml.models.BaseModel static method) (dclab.ml.models.TensorflowModel static method) save_modc() (in module dclab.ml.modc) scalar_feature_exists() (in module dclab.definitions) scalar_feature_names (in module dclab.definitions) scale_area_um() (in module dclab.features.emodulus.scale_linear) scale_emodulus() (in module dclab.features.emodulus.scale_linear)

scale_feature() (in module dclab.features.emodulus.scale_linear) scale_volume() (in module dclab.features.emodulus.scale_linear) set_options() (dclab.lme4.wrapr.Rlme4 method) set_r_path() (in module dclab.lme4.rsetup) set_temporary_feature() (in module dclab.rtdc_dataset.feat_temp) shuffle_array() (in module dclab.ml.tf_dataset) Statistics (class in dclab.statistics) SUPPORTED_FORMATS (in module dclab.ml.modc) supported_formats() (dclab.ml.models.BaseModel static method) (dclab.ml.models.TensorflowModel static method)

T

TemperatureOutOfRangeWarning TensorflowModel (class in dclab.ml.models) title (dclab.rtdc_dataset.RTDCBase attribute)

tojson() (dclab.rtdc_dataset.config.Configuration method) tostring() (dclab.rtdc_dataset.config.Configuration method) tsv() (dclab.rtdc_dataset.export.Export method)

U

unique_id_exists() (dclab.polygon_filter.PolygonFilter static method) unregister() (dclab.ml.models.BaseModel method)

update() (dclab.rtdc_dataset.config.Configuration method) (dclab.rtdc_dataset.filter.Filter method)

V

valid() (in module dclab.downsampling)

VersionError

W

write_to_stream() (dclab.lme4.rsetup.AutoRConsole method)

Y

YoungsModulusLookupTableExceededWarning