Index

A

add() (dclab.isoelastics.Isoelastics method) add_api_key() (dclab.rtdc_dataset.fmt_dcor.api.APIHandler class method) add_dataset() (dclab.lme4.wrapr.Rlme4 method) add_px_err() (dclab.isoelastics.Isoelastics static method) ALIAS_MEDIA (in module dclab.features.emodulus.viscosity) all (dclab.rtdc_dataset.filter.Filter property) AncillaryFeature (class in dclab.rtdc_dataset.feat_anc_core.ancillary_feature) api_key (dclab.rtdc_dataset.fmt_dcor.api.APIHandler attribute) api_keys (dclab.rtdc_dataset.fmt_dcor.api.APIHandler attribute)

APIHandler (class in dclab.rtdc_dataset.fmt_dcor.api) apply_filter() (dclab.rtdc_dataset.RTDC_Hierarchy method) (dclab.rtdc_dataset.RTDCBase method) arr2str() (in module dclab.lme4.wrapr) as_dict() (dclab.rtdc_dataset.feat_basin.Basin method) AutoRecursiveDict (class in dclab.isoelastics) available_features() (dclab.rtdc_dataset.feat_anc_core.ancillary_feature.AncillaryFeature static method) available_methods (dclab.statistics.Statistics attribute) avi() (dclab.rtdc_dataset.export.Export method)

B

BadFeatureSizeWarning BadMethodWarning Basin (class in dclab.rtdc_dataset.feat_basin) basin_format (dclab.rtdc_dataset.feat_basin.Basin property) basin_priority_sorted_key() (in module dclab.rtdc_dataset.feat_basin) basin_type (dclab.rtdc_dataset.feat_basin.Basin property) BasinAvailabilityChecker (class in dclab.rtdc_dataset.feat_basin) basinmap (dclab.rtdc_dataset.feat_basin.Basin property) BasinmapFeatureMissingError BasinNotAvailableError BasinProxyFeature (class in dclab.rtdc_dataset.feat_basin)

basins (dclab.rtdc_dataset.RTDC_Hierarchy property) (dclab.rtdc_dataset.RTDCBase property) basins_get_dicts() (dclab.rtdc_dataset.RTDC_DCOR method) (dclab.rtdc_dataset.RTDC_HDF5 method) (dclab.rtdc_dataset.RTDCBase method) basins_retrieve() (dclab.rtdc_dataset.RTDCBase method) bin_num_doane() (in module dclab.kde_methods) bin_width_doane() (in module dclab.kde_methods) bin_width_percentile() (in module dclab.kde_methods) bootstrapped_median_distributions() (in module dclab.lme4.wrapr) box (dclab.rtdc_dataset.filter.Filter property)

C

cache_queries (dclab.rtdc_dataset.fmt_dcor.api.APIHandler attribute) can_open() (dclab.rtdc_dataset.RTDC_HDF5 static method) CFG_ANALYSIS (in module dclab.definitions.meta_const) CFG_METADATA (in module dclab.definitions.meta_const) check_data() (dclab.lme4.wrapr.Rlme4 method) check_data_size() (dclab.rtdc_dataset.feat_anc_core.ancillary_feature.AncillaryFeature static method) check_feature_shape() (in module dclab.definitions) check_lut_identifier() (in module dclab.isoelastics) check_temperature() (in module dclab.features.emodulus.viscosity) CHUNK_SIZE (in module dclab.rtdc_dataset.writer) CHUNK_SIZE_BYTES (in module dclab.rtdc_dataset.writer) clear_all_filters() (dclab.polygon_filter.PolygonFilter static method) close() (dclab.rtdc_dataset.feat_basin.Basin method) (dclab.rtdc_dataset.fmt_http.RTDC_HTTP method) (dclab.rtdc_dataset.fmt_s3.RTDC_S3 method) (dclab.rtdc_dataset.fmt_s3.S3File method) (dclab.rtdc_dataset.RTDC_HDF5 method) (dclab.rtdc_dataset.RTDCBase method) (dclab.rtdc_dataset.writer.RTDCWriter method)

compress() (in module dclab.cli) compute() (dclab.rtdc_dataset.feat_anc_core.ancillary_feature.AncillaryFeature method) condense() (in module dclab.cli) condense_dataset() (in module dclab.cli) config (dclab.rtdc_dataset.RTDCBase attribute) config_key_exists() (in module dclab.definitions) config_keys (in module dclab.definitions.meta_const) Configuration (class in dclab.rtdc_dataset.config) convert() (dclab.isoelastics.Isoelastics static method) (in module dclab.features.emodulus.scale_linear) copy() (dclab.polygon_filter.PolygonFilter method) (dclab.rtdc_dataset.config.Configuration method) corr_deform_with_area_um() (in module dclab.features.emodulus.pxcorr) corr_deform_with_volume() (in module dclab.features.emodulus.pxcorr) correct_crosstalk() (in module dclab.features.fl_crosstalk) counter_clockwise() (in module dclab.features.volume) CyclicBasinDependencyFoundWarning

D

data (dclab.lme4.wrapr.Rlme4 attribute) dclab.cli module dclab.definitions.meta_parse module dclab.downsampling module dclab.features.emodulus module dclab.features.emodulus.load module dclab.features.emodulus.pxcorr module dclab.features.emodulus.scale_linear module dclab.features.emodulus.viscosity module dclab.isoelastics module dclab.kde_contours module dclab.kde_methods module dclab.lme4.rsetup module dclab.lme4.wrapr module

dclab.polygon_filter module dclab.rtdc_dataset.copier module dclab.rtdc_dataset.feat_anc_core.ancillary_feature module dclab.rtdc_dataset.feat_anc_plugin.plugin_feature module dclab.rtdc_dataset.feat_basin module dclab.rtdc_dataset.feat_temp module dclab.rtdc_dataset.fmt_http module dclab.rtdc_dataset.fmt_s3 module dclab.rtdc_dataset.writer module dclab.statistics module dcserv_api_version (dclab.rtdc_dataset.fmt_dcor.api.APIHandler attribute) deregister_all() (in module dclab.rtdc_dataset.feat_temp) deregister_temporary_feature() (in module dclab.rtdc_dataset.feat_temp) description (dclab.rtdc_dataset.feat_basin.Basin attribute) download_range() (dclab.rtdc_dataset.fmt_s3.S3File method) downsample_grid() (in module dclab.downsampling) downsample_rand() (in module dclab.downsampling) ds (dclab.rtdc_dataset.feat_basin.Basin property)

E

Export (class in dclab.rtdc_dataset.export) export (dclab.rtdc_dataset.RTDCBase attribute)

EXTERNAL_LUTS (in module dclab.features.emodulus.load) extrapolate_emodulus() (in module dclab.features.emodulus)

F

f1dfloatduple() (in module dclab.definitions.meta_parse) f2dfloatarray() (in module dclab.definitions.meta_parse) fbool() (in module dclab.definitions.meta_parse) fboolorfloat() (in module dclab.definitions.meta_parse) fcs() (dclab.rtdc_dataset.export.Export method) feature (dclab.lme4.wrapr.Rlme4 attribute) feature_exists() (in module dclab.definitions) feature_labels (in module dclab.definitions.feat_const) feature_name (dclab.rtdc_dataset.feat_anc_plugin.plugin_feature.PlugInFeature attribute) feature_name2label (in module dclab.definitions.feat_const) feature_names (dclab.rtdc_dataset.feat_anc_core.ancillary_feature.AncillaryFeature attribute) (in module dclab.definitions.feat_const) features (dclab.rtdc_dataset.feat_anc_core.ancillary_feature.AncillaryFeature attribute) (dclab.rtdc_dataset.feat_basin.Basin property) (dclab.rtdc_dataset.RTDC_Hierarchy property) (dclab.rtdc_dataset.RTDCBase property) features_ancillary (dclab.rtdc_dataset.RTDC_Hierarchy property) (dclab.rtdc_dataset.RTDCBase property) features_basin (dclab.rtdc_dataset.RTDC_Hierarchy property) (dclab.rtdc_dataset.RTDCBase property) features_innate (dclab.rtdc_dataset.RTDC_Hierarchy property) (dclab.rtdc_dataset.RTDCBase property)

features_loaded (dclab.rtdc_dataset.RTDC_Hierarchy property) (dclab.rtdc_dataset.RTDCBase property) features_local (dclab.rtdc_dataset.RTDC_Hierarchy property) (dclab.rtdc_dataset.RTDCBase property) FEATURES_NON_SCALAR (in module dclab.definitions.feat_const) features_scalar (dclab.rtdc_dataset.RTDC_Hierarchy property) (dclab.rtdc_dataset.RTDCBase property) FEATURES_UINT32 (in module dclab.rtdc_dataset.writer) FEATURES_UINT64 (in module dclab.rtdc_dataset.writer) Filter (class in dclab.rtdc_dataset.filter) filter (dclab.rtdc_dataset.RTDCBase property) filter() (dclab.polygon_filter.PolygonFilter method) FilterIdExistsWarning find_contours_level() (in module dclab.kde_contours) fint() (in module dclab.definitions.meta_parse) fintlist() (in module dclab.definitions.meta_parse) fit() (dclab.lme4.wrapr.Rlme4 method) flow_rate() (in module dclab.statistics) format (dclab.rtdc_dataset.RTDCBase attribute) func_types (in module dclab.definitions.meta_parse)

G

get() (dclab.isoelastics.Isoelastics method) (dclab.rtdc_dataset.config.Configuration method) get_available_files() (in module dclab.isoelastics) get_available_identifiers() (in module dclab.isoelastics) get_bad_vals() (in module dclab.kde_methods) get_best_nd_chunks() (dclab.rtdc_dataset.writer.RTDCWriter static method) get_bright() (in module dclab.features.bright) get_command_log() (in module dclab.cli) get_compensation_matrix() (in module dclab.features.fl_crosstalk) get_config_value_descr() (in module dclab.definitions) get_config_value_func() (in module dclab.definitions) get_config_value_type() (in module dclab.definitions) get_contour() (in module dclab.features.contour) get_default() (in module dclab.isoelastics) get_differential_dataset() (dclab.lme4.wrapr.Rlme4 method) get_downsampled_scatter() (dclab.rtdc_dataset.RTDCBase method) get_emodulus() (in module dclab.features.emodulus) get_endpoint_url() (in module dclab.rtdc_dataset.fmt_s3) get_feature() (dclab.statistics.Statistics method) get_feature_data() (dclab.lme4.wrapr.Rlme4 method) (dclab.rtdc_dataset.feat_basin.Basin method) get_feature_label() (in module dclab.definitions) get_full_url() (dclab.rtdc_dataset.RTDC_DCOR static method) get_inert_ratio_cvx() (in module dclab.features.inert_ratio) get_inert_ratio_raw() (in module dclab.features.inert_ratio) get_instance_from_id() (dclab.polygon_filter.PolygonFilter static method)

get_instances() (dclab.rtdc_dataset.feat_anc_core.ancillary_feature.AncillaryFeature static method) get_internal_lut_names_dict() (in module dclab.features.emodulus.load) get_job_info() (in module dclab.cli) get_kde_contour() (dclab.rtdc_dataset.RTDCBase method) get_kde_scatter() (dclab.rtdc_dataset.RTDCBase method) get_kde_spacing() (dclab.rtdc_dataset.RTDCBase static method) get_lut_path() (in module dclab.features.emodulus.load) get_measurement_identifier() (dclab.rtdc_dataset.feat_basin.Basin method) (dclab.rtdc_dataset.RTDCBase method) get_object_path() (in module dclab.rtdc_dataset.fmt_s3) get_pixelation_delta() (in module dclab.features.emodulus.pxcorr) get_pixelation_delta_pair() (in module dclab.features.emodulus.pxcorr) get_polygon_filter_names() (in module dclab.polygon_filter) get_project_name_from_path() (in module dclab.rtdc_dataset.fmt_tdms) get_quantile_levels() (in module dclab.kde_contours) get_r_path() (in module dclab.lme4.rsetup) get_r_script_path() (in module dclab.lme4.rsetup) get_r_version() (in module dclab.lme4.rsetup) get_root_parent() (dclab.rtdc_dataset.RTDC_Hierarchy method) get_statistics() (in module dclab.statistics) get_tdms_files() (in module dclab.rtdc_dataset.fmt_tdms) get_viscosity() (in module dclab.features.emodulus.viscosity) get_viscosity_mc_pbs_buyukurganci_2022() (in module dclab.features.emodulus.viscosity) get_viscosity_mc_pbs_herold_2017() (in module dclab.features.emodulus.viscosity) get_viscosity_water_kestin_1978() (in module dclab.features.emodulus.viscosity) get_volume() (in module dclab.features.volume) get_with_rtdcbase() (dclab.isoelastics.Isoelastics method)

H

h5ds_copy() (in module dclab.rtdc_dataset.copier) has_lme4() (in module dclab.lme4.rsetup) has_r() (in module dclab.lme4.rsetup) hash (dclab.polygon_filter.PolygonFilter property) (dclab.rtdc_dataset.RTDC_DCOR property) (dclab.rtdc_dataset.RTDC_Dict property) (dclab.rtdc_dataset.RTDC_HDF5 property) (dclab.rtdc_dataset.RTDC_Hierarchy property) (dclab.rtdc_dataset.RTDCBase property)

hash() (dclab.rtdc_dataset.feat_anc_core.ancillary_feature.AncillaryFeature method) hdf5() (dclab.rtdc_dataset.export.Export method) HDF5Basin (class in dclab.rtdc_dataset.fmt_hdf5.basin) hparent (dclab.rtdc_dataset.RTDC_Hierarchy attribute) HTTPBasin (class in dclab.rtdc_dataset.fmt_http)

I

identifier (dclab.rtdc_dataset.RTDCBase property) ignore_basins() (dclab.rtdc_dataset.RTDCBase method) ignore_nan_inf() (in module dclab.kde_methods) ignored_basins (dclab.rtdc_dataset.feat_basin.Basin attribute) import_all() (dclab.polygon_filter.PolygonFilter static method) import_plugin_feature_script() (in module dclab.rtdc_dataset.feat_anc_plugin.plugin_feature) INACCURATE_SPLINE_EXTRAPOLATION (in module dclab.features.emodulus) instace_exists() (dclab.polygon_filter.PolygonFilter static method) instances (dclab.polygon_filter.PolygonFilter attribute) InternalH5DatasetBasin (class in dclab.rtdc_dataset.feat_basin) invalid (dclab.rtdc_dataset.filter.Filter property)

is_available() (dclab.rtdc_dataset.feat_anc_core.ancillary_feature.AncillaryFeature method) (dclab.rtdc_dataset.feat_basin.Basin method) (dclab.rtdc_dataset.feat_basin.InternalH5DatasetBasin method) (dclab.rtdc_dataset.fmt_hdf5.basin.HDF5Basin method) (dclab.rtdc_dataset.fmt_http.HTTPBasin method) (dclab.rtdc_dataset.fmt_s3.S3Basin method) is_differential() (dclab.lme4.wrapr.Rlme4 method) is_properly_compressed() (in module dclab.rtdc_dataset.copier) is_s3_object_available() (in module dclab.rtdc_dataset.fmt_s3) is_s3_url() (in module dclab.rtdc_dataset.fmt_s3) Isoelastics (class in dclab.isoelastics) IsoelasticsEmodulusMeaninglessWarning

J

join() (in module dclab.cli)

K

kde_gauss() (in module dclab.kde_methods) kde_histogram() (in module dclab.kde_methods) kde_multivariate() (in module dclab.kde_methods) kde_none() (in module dclab.kde_methods)

keys() (dclab.rtdc_dataset.config.Configuration method) KNOWN_MEDIA (in module dclab.features.emodulus.viscosity) KnowWhatYouAreDoingWarning kwargs (dclab.rtdc_dataset.feat_basin.Basin attribute)

L

lcstr() (in module dclab.definitions.meta_parse) LimitingExportSizeWarning load_data() (dclab.isoelastics.Isoelastics method) load_dataset() (dclab.rtdc_dataset.feat_basin.Basin method) load_from_file() (in module dclab.rtdc_dataset.config)

load_lut() (in module dclab.features.emodulus.load) load_mtext() (in module dclab.features.emodulus.load) load_plugin_feature() (in module dclab.rtdc_dataset.feat_anc_plugin.plugin_feature) location (dclab.rtdc_dataset.feat_basin.Basin attribute) logs (dclab.rtdc_dataset.RTDC_Hierarchy property) (dclab.rtdc_dataset.RTDCBase attribute)

M

mapping (dclab.rtdc_dataset.feat_basin.Basin attribute) measurement_identifier (dclab.rtdc_dataset.feat_basin.Basin attribute) MIN_DCLAB_EXPORT_VERSION (in module dclab.rtdc_dataset.fmt_hdf5) mode() (in module dclab.statistics) model (dclab.lme4.wrapr.Rlme4 attribute) module dclab.cli dclab.definitions.meta_parse dclab.downsampling dclab.features.emodulus dclab.features.emodulus.load dclab.features.emodulus.pxcorr dclab.features.emodulus.scale_linear dclab.features.emodulus.viscosity dclab.isoelastics dclab.kde_contours dclab.kde_methods dclab.lme4.rsetup dclab.lme4.wrapr dclab.polygon_filter dclab.rtdc_dataset.copier dclab.rtdc_dataset.feat_anc_core.ancillary_feature dclab.rtdc_dataset.feat_anc_plugin.plugin_feature dclab.rtdc_dataset.feat_basin dclab.rtdc_dataset.feat_temp dclab.rtdc_dataset.fmt_http dclab.rtdc_dataset.fmt_s3 dclab.rtdc_dataset.writer dclab.statistics

N

name (dclab.rtdc_dataset.feat_basin.Basin attribute) new_dataset() (in module dclab)

norm() (in module dclab.downsampling) normalize() (in module dclab.features.emodulus)

P

parse_config() (dclab.rtdc_dataset.RTDC_HDF5 static method) parse_result() (dclab.lme4.wrapr.Rlme4 method) path (dclab.rtdc_dataset.fmt_http.RTDC_HTTP attribute) (dclab.rtdc_dataset.fmt_s3.RTDC_S3 attribute) (dclab.rtdc_dataset.RTDC_DCOR attribute) (dclab.rtdc_dataset.RTDC_HDF5 attribute) (dclab.rtdc_dataset.RTDC_TDMS attribute) (dclab.rtdc_dataset.RTDCBase attribute) plugin_feature_info (dclab.rtdc_dataset.feat_anc_plugin.plugin_feature.PlugInFeature attribute) plugin_path (dclab.rtdc_dataset.feat_anc_plugin.plugin_feature.PlugInFeature attribute)

PlugInFeature (class in dclab.rtdc_dataset.feat_anc_plugin.plugin_feature) PluginImportError point_in_poly() (dclab.polygon_filter.PolygonFilter static method) points (dclab.polygon_filter.PolygonFilter property) polygon (dclab.rtdc_dataset.filter.Filter property) polygon_filter_add() (dclab.rtdc_dataset.RTDCBase method) polygon_filter_rm() (dclab.rtdc_dataset.RTDCBase method) PolygonFilter (class in dclab.polygon_filter) PolygonFilterError populate_grid() (in module dclab.downsampling)

R

rectify_metadata() (dclab.rtdc_dataset.writer.RTDCWriter method) REGEXP_S3_URL (in module dclab.rtdc_dataset.fmt_s3) register_lut() (in module dclab.features.emodulus.load) register_temporary_feature() (in module dclab.rtdc_dataset.feat_temp) rejuvenate() (dclab.rtdc_dataset.RTDC_Hierarchy method) remove() (dclab.polygon_filter.PolygonFilter static method) remove_all_plugin_features() (in module dclab.rtdc_dataset.feat_anc_plugin.plugin_feature) remove_plugin_feature() (in module dclab.rtdc_dataset.feat_anc_plugin.plugin_feature) repack() (in module dclab.cli) require_lme4() (in module dclab.lme4.rsetup) require_r() (in module dclab.lme4.rsetup) reset() (dclab.rtdc_dataset.filter.Filter method) reset_filter() (dclab.rtdc_dataset.RTDCBase method)

Rlme4 (class in dclab.lme4.wrapr) RNotFoundError rtdc_copy() (in module dclab.rtdc_dataset.copier) RTDC_DCOR (class in dclab.rtdc_dataset) RTDC_Dict (class in dclab.rtdc_dataset) RTDC_HDF5 (class in dclab.rtdc_dataset) RTDC_Hierarchy (class in dclab.rtdc_dataset) RTDC_HTTP (class in dclab.rtdc_dataset.fmt_http) RTDC_S3 (class in dclab.rtdc_dataset.fmt_s3) RTDC_TDMS (class in dclab.rtdc_dataset) RTDCBase (class in dclab.rtdc_dataset) RTDCWriter (class in dclab.rtdc_dataset.writer) run() (dclab.rtdc_dataset.feat_basin.BasinAvailabilityChecker method) run_command() (in module dclab.lme4.rsetup)

S

S3Basin (class in dclab.rtdc_dataset.fmt_s3) S3File (class in dclab.rtdc_dataset.fmt_s3) SAME_MEDIA (in module dclab.features.emodulus.viscosity) save() (dclab.polygon_filter.PolygonFilter method) (dclab.rtdc_dataset.config.Configuration method) save_all() (dclab.polygon_filter.PolygonFilter static method) scalar_feature_exists() (in module dclab.definitions) scalar_feature_names (in module dclab.definitions.feat_const) scale_area_um() (in module dclab.features.emodulus.scale_linear) scale_emodulus() (in module dclab.features.emodulus.scale_linear) scale_feature() (in module dclab.features.emodulus.scale_linear) scale_volume() (in module dclab.features.emodulus.scale_linear)

session (dclab.rtdc_dataset.fmt_dcor.api.APIHandler attribute) set_options() (dclab.lme4.wrapr.Rlme4 method) set_r_path() (in module dclab.lme4.rsetup) set_temporary_feature() (in module dclab.rtdc_dataset.feat_temp) shear_rate_square_channel() (in module dclab.features.emodulus.viscosity) split() (in module dclab.cli) Statistics (class in dclab.statistics) store_basin() (dclab.rtdc_dataset.writer.RTDCWriter method) store_feature() (dclab.rtdc_dataset.writer.RTDCWriter method) store_log() (dclab.rtdc_dataset.writer.RTDCWriter method) store_metadata() (dclab.rtdc_dataset.writer.RTDCWriter method) store_table() (dclab.rtdc_dataset.writer.RTDCWriter method)

T

tables (dclab.rtdc_dataset.RTDC_Hierarchy property) (dclab.rtdc_dataset.RTDCBase attribute) tdms2rtdc() (in module dclab.cli) TemperatureOutOfRangeWarning

title (dclab.rtdc_dataset.RTDCBase attribute) tojson() (dclab.rtdc_dataset.config.Configuration method) tostring() (dclab.rtdc_dataset.config.Configuration method) tsv() (dclab.rtdc_dataset.export.Export method)

U

unique_id_exists() (dclab.polygon_filter.PolygonFilter static method) update() (dclab.rtdc_dataset.config.Configuration method) (dclab.rtdc_dataset.filter.Filter method)

url (dclab.rtdc_dataset.fmt_dcor.api.APIHandler attribute)

V

valid() (in module dclab.downsampling) verify (dclab.rtdc_dataset.fmt_dcor.api.APIHandler attribute) verify_basin() (dclab.rtdc_dataset.feat_basin.InternalH5DatasetBasin method)

verify_dataset() (in module dclab.cli) version_brand() (dclab.rtdc_dataset.writer.RTDCWriter method) vol_revolve() (in module dclab.features.volume)

W

write_image_float32() (dclab.rtdc_dataset.writer.RTDCWriter method) write_image_grayscale() (dclab.rtdc_dataset.writer.RTDCWriter method)

write_ndarray() (dclab.rtdc_dataset.writer.RTDCWriter method) write_ragged() (dclab.rtdc_dataset.writer.RTDCWriter method) write_text() (dclab.rtdc_dataset.writer.RTDCWriter method)

Y

YoungsModulusLookupTableExceededWarning