Dclab is a Python library for the post-measurement analysis of real-time deformability cytometry (RT-DC) datasets. This is the documentation of dclab version 0.14.8.

Documentation

Contents:

• Getting started
  • Installation
  • Use cases
  • Basic usage
• Command-line interface
  • dclab-condense
  • dclab-join
  • dclab-tdms2rtdc
  • dclab-verify-dataset
• Examples
  • Plotting isoelastics
• Advanced Usage
  • Notation
    • Events
    • Features
    • Ancillary features
    • Filters
    • Experiment metadata
    • Analysis metadata
  • RT-DC datasets
    • Basic usage
    • Statistics
    • Export
  • Scatter plots
    • KDE scatter plot
    • KDE scatter plot with event-density-based downsampling
    • KDE estimate on a log-scale
    • Isoelasticity lines
    • Contour plot with percentiles
    • Polygon filters / Shape-Out
  • Fluorescence traces
• Code reference
  • module-level methods
  • global definitions
    • configuration
    • features
    • parse functions
  • RT-DC dataset manipulation
    • Base class
    • Dictionary format
    • HDF5 (.rtdc) format
    • Hierarchy format
    • TDMS format
    • config
    • export
    • filter
  • low-level functionalities
    • downsampling
    • features
    • isoelastics
    • kde_contours
    • kde_methods
    • polygon_filter
    • statistics

• Changelog
• Bilbliography
• Imprint/Impressum

Indices and tables

• Index
• Module Index
• Search Page